nipoppy init

Note

This command calls the nipoppy.workflows.dataset_init.InitWorkflow class from the Python API internally.

Initialize a new dataset.

usage: nipoppy init [--bids-source BIDS_SOURCE] [--layout FPATH_LAYOUT]
                    [--verbosity {0,1,2,3}] [--dry-run] [-h]
                    dataset_root

Positional Arguments

dataset_root

Path to the root of the dataset.

Named Arguments

--bids-source

Path to a BIDS dataset to initialize the layout with.

Global options

--layout

Path to a custom layout specification file, to be used instead of the default layout.

--verbosity

Possible choices: 0, 1, 2, 3

Verbosity level, from 0 (least verbose) to 3 (most verbose). Default: 2.

--dry-run

Print commands but do not execute them.