nipoppy.workflows.doughnut.DoughnutWorkflow

class nipoppy.workflows.doughnut.DoughnutWorkflow(dpath_root, empty=False, regenerate=False, fpath_layout=None, verbose=False, dry_run=False)

Workflow for creating/updating a dataset’s doughnut file.

Parameters:

• dpath_root (pathlib.Path)

• empty (bool)

• regenerate (bool)

• fpath_layout (Optional[nipoppy.env.StrOrPathLike])

• verbose (bool)

• dry_run (bool)

run_cleanup()

Log a success message.

run_main()

Generate/update the dataset’s doughnut file.

empty = False

regenerate = False