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Overview

Why Nipoppy?
- The principles
- The use cases
Installation
Quickstart

Tutorials

Run MRIQC on a BIDS dataset
Integrations
- DataLad
Video series
- What is?
- How to?

Explanations

The manifest file

How-to guides

User guide (legacy)
Initializing a new dataset
- Starting with non-BIDS data
- Starting with BIDS data
Creating the manifest file
Organizing tabular data
Installing a pipeline
Running a pipeline
Tracking pipeline statuses
Parallelizing pipeline runs
- HPC job scheduling
- Local parallelization
Developing a Nipoppy pipeline

Reference

Command-line interface
Python API
- nipoppy
File schemas

Other

What’s new
Contributing
Glossary

nipoppy.workflows.tracker¶

PipelineTracker workflow.

Classes¶

PipelineTracker

Pipeline tracker.

nipoppy.workflows.tracker.PipelineTracker

nipoppy.workflows.track_curation.TrackCurationWorkflow

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nipoppy.workflows.tracker
- Classes