nipoppy.workflows.dataset_init.InitWorkflow¶
- class nipoppy.workflows.dataset_init.InitWorkflow(dpath_root, bids_source=None, fpath_layout=None, logger=None, dry_run=False)¶
Workflow for init command.
- Parameters:
dpath_root (pathlib.Path)
fpath_layout (Optional[nipoppy.env.StrOrPathLike])
logger (Optional[logging.Logger])
dry_run (bool)
- run_cleanup()¶
Log a success message.
- run_main()¶
Create dataset directory structure.
Create directories and add a readme in each. Copy boutiques descriptors and invocations. Copy default config files.
If the BIDS source dataset is requested, it is copied.
- bids_source¶
- fname_readme = 'README.md'¶
- validate_layout = False¶