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Nipoppy

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Overview

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Command-line interface
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Python API
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- nipoppy
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  - nipoppy.base
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    - nipoppy.base.Base
  - nipoppy.config
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    - nipoppy.config.boutiques
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      - nipoppy.config.boutiques.BoutiquesConfig
    - nipoppy.config.container
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      - nipoppy.config.container.ContainerConfig
      - nipoppy.config.container.ContainerInfo
    - nipoppy.config.main
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      - nipoppy.config.main.Config
    - nipoppy.config.pipeline
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    - nipoppy.config.pipeline_step
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    - nipoppy.config.tracker
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      - nipoppy.config.tracker.TrackerConfig
    - nipoppy.config.BasePipelineConfig
    - nipoppy.config.BasePipelineStepConfig
    - nipoppy.config.BidsPipelineConfig
    - nipoppy.config.BidsPipelineStepConfig
    - nipoppy.config.BoutiquesConfig
    - nipoppy.config.Config
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    - nipoppy.config.ProcPipelineConfig
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    - nipoppy.config.TrackerConfig
  - nipoppy.env
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    - nipoppy.env.LogColor
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  - nipoppy.layout
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  - nipoppy.logger
  - nipoppy.tabular
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    - nipoppy.tabular.bagel
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      - nipoppy.tabular.bagel.Bagel
      - nipoppy.tabular.bagel.BagelModel
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      - nipoppy.tabular.base.BaseTabular
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    - nipoppy.tabular.dicom_dir_map
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      - nipoppy.tabular.dicom_dir_map.DicomDirMap
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      - nipoppy.tabular.manifest.Manifest
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  - nipoppy.utils
  - nipoppy.workflows
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    - nipoppy.workflows.dataset_init
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Extracting IDPs from pipeline derivatives¶

Work in progress!

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