nipoppy.workflows.dataset_status.StatusWorkflow

class nipoppy.workflows.dataset_status.StatusWorkflow(dpath_root, fpath_layout=None, logger=None, dry_run=False)

Workflow for status command.

Parameters:

• dpath_root (pathlib.Path)

• fpath_layout (Optional[nipoppy.env.StrOrPathLike])

• logger (Optional[logging.Logger])

• dry_run (bool)

run_main()

Check the status of the dataset and report.

1. Number of participants in manifest per BIDS datatype,

2. Doughnut information if available,

3. Bagel information if available

col_pipeline = 'pipeline'