nipoppy.workflows

Classes for running workflows on datasets.

Submodules

• nipoppy.workflows.base
• nipoppy.workflows.bids_conversion
• nipoppy.workflows.dataset_init
• nipoppy.workflows.dataset_status
• nipoppy.workflows.dicom_reorg
• nipoppy.workflows.doughnut
• nipoppy.workflows.extractor
• nipoppy.workflows.pipeline
• nipoppy.workflows.runner
• nipoppy.workflows.tracker

Classes

BasePipelineWorkflow	A workflow for a pipeline that has a Boutiques descriptor.
BaseWorkflow	Base class with logging/subprocess utilities.
BidsConversionRunner	Convert data to BIDS.
DicomReorgWorkflow	Workflow for organizing raw DICOM files.
DoughnutWorkflow	Workflow for creating/updating a dataset's doughnut file.
ExtractionRunner	Convert data to BIDS.
InitWorkflow	Workflow for init command.
PipelineRunner	Pipeline runner.
PipelineTracker	Pipeline tracker.