nipoppy.cli

Define a custom Click group that supports command aliases and preserves order.

Submodules

• nipoppy.cli.groups
• nipoppy.cli.options
• nipoppy.cli.pipeline_catalog

Exceptions

NipoppyError	Base exception class for all nipoppy errors.
ZenodoAPIError	Common base class for all non-exit exceptions.

Classes

ReturnCode

Return codes used for the CLI commands.

Package Contents

nipoppy.cli.exception_handler(workflow)

Handle exceptions raised during workflow execution.

nipoppy.cli.get_logger(verbose=False)

Retrieve the logger.

Parameters:

verbose (bool)

Return type:

NipoppyLogger

nipoppy.cli.BUG_REPORT_URL = 'https://github.com/nipoppy/nipoppy/issues/new/choose?template=1-bug.yml'

nipoppy.cli.DISCORD_URL = 'https://discord.gg/2VMKFRpjkm'

nipoppy.cli.logger