nipoppy.workflows.dataset_init.InitWorkflow¶

class nipoppy.workflows.dataset_init.InitWorkflow(dpath_root, bids_source=None, mode='symlink', force=False, container_store=None, fpath_layout=None, default_config=False, verbose=False, dry_run=False)¶

Workflow for init command.

Parameters:

dpath_root (pathlib.Path)
container_store (nipoppy.env.StrOrPathLike | None)
fpath_layout (nipoppy.env.StrOrPathLike | None)
default_config (bool)
verbose (bool)
dry_run (bool)

run_main()¶

Create dataset directory structure.

Create directories and add a readme in each. Copy boutiques descriptors and invocations. Copy default config files. Copy HPC config files.

bids_source = None¶

container_store = None¶

default_config = False¶

fname_readme = 'README.md'¶

force = False¶

mode = 'symlink'¶