nipoppy.workflows.doughnut

Workflow for init command.

Module Contents

class nipoppy.workflows.doughnut.DoughnutWorkflow(dpath_root, empty=False, regenerate=False, fpath_layout=None, logger=None, dry_run=False)

Bases: nipoppy.workflows.base.BaseWorkflow

Workflow for creating/updating a dataset’s doughnut file.

Parameters:

• dpath_root (pathlib.Path)

• empty (bool)

• regenerate (bool)

• fpath_layout (Optional[nipoppy.env.StrOrPathLike])

• logger (Optional[logging.Logger])

• dry_run (bool)

run_cleanup()

Log a success message.

run_main()

Generate/update the dataset’s doughnut file.