nipoppy track

Note

This command calls the nipoppy.workflows.tracker.PipelineTracker class from the Python API internally.

Logfiles for this command can be found in <DATASET_ROOT>/scratch/logs/track.

Track the processing status of a pipeline.

usage: nipoppy track --dataset-root DATASET_ROOT --pipeline PIPELINE
                     [--pipeline-version PIPELINE_VERSION]
                     [--participant-id PARTICIPANT_ID]
                     [--session-id SESSION_ID] [--layout FPATH_LAYOUT]
                     [--verbosity VERBOSITY] [--dry-run] [-h]

Named Arguments

--dataset-root

Path to the root of the dataset.

--pipeline

Pipeline name, as specified in the config file.

--pipeline-version

Pipeline version, as specified in the config file.

--participant-id

Participant ID (with or without the sub- prefix).

--session-id

Session ID (with or without the ses- prefix).

Global options

--layout

Path to a custom layout specification file, to be used instead of the default layout.

--verbosity

Verbosity level, from 0 (least verbose) to 3 (most verbose). Default: 2.

--dry-run

Print commands but do not execute them.