nipoppy.tabular¶

Classes for tabular data representation/manipulation.

Submodules¶

Classes¶

`CurationStatusTable`	A dataset's curation status file, for tracking BIDSification progress.
`Manifest`	A dataset's manifest.
`ProcessingStatusTable`	A file to track data availability/processing status.

Package Contents¶

nipoppy.tabular.generate_curation_status_table(manifest, dicom_dir_map, dpath_downloaded=None, dpath_organized=None, dpath_bidsified=None, empty=False, logger=None)¶

Generate a curation status table.

Parameters:

manifest (nipoppy.tabular.manifest.Manifest)
dicom_dir_map (nipoppy.tabular.dicom_dir_map.DicomDirMap)
dpath_downloaded (Optional[nipoppy.env.StrOrPathLike])
dpath_organized (Optional[nipoppy.env.StrOrPathLike])
dpath_bidsified (Optional[nipoppy.env.StrOrPathLike])
logger (Optional[logging.Logger])

Return type:

CurationStatusTable

nipoppy.tabular.update_curation_status_table(curation_status_table, manifest, dicom_dir_map, dpath_downloaded=None, dpath_organized=None, dpath_bidsified=None, empty=False, logger=None)¶

Update an existing curation status file.

Parameters:

curation_status_table (CurationStatusTable)
manifest (nipoppy.tabular.manifest.Manifest)
dicom_dir_map (nipoppy.tabular.dicom_dir_map.DicomDirMap)
dpath_downloaded (Optional[nipoppy.env.StrOrPathLike])
dpath_organized (Optional[nipoppy.env.StrOrPathLike])
dpath_bidsified (Optional[nipoppy.env.StrOrPathLike])
logger (Optional[logging.Logger])

Return type:

CurationStatusTable