nipoppy track-curation

Note

This command calls the nipoppy.workflows.track_curation.TrackCurationWorkflow class from the Python API internally.

nipoppy track-curation

Create or update a dataset’s curation status file.

Usage

nipoppy track-curation [OPTIONS]

Options

--dataset <dpath_root>

Path to the root of the dataset. Default: current working directory or the closest parent directory that contains a .nipoppy directory.

--empty

Set all statuses to False in newly added records (regardless of what is on disk). May be useful to reduce runtime.

-f, --force, --regenerate

Regenerate the curation status file even if it already exists (default: only append rows for new records)

--dry-run

Print commands but do not execute them.

-v, --verbose

Verbose mode (Show DEBUG messages).

--layout <fpath_layout>

Path to a custom layout specification file, to be used instead of the default layout.

Environment variables

NIPOPPY_LAYOUT

Provide a default for --layout