nipoppy pipeline create¶
Note
This command calls the nipoppy.workflows.pipeline_store.create.PipelineCreateWorkflow class from the Python API internally.
nipoppy pipeline create¶
Create a template pipeline config directory.
Usage
nipoppy pipeline create [OPTIONS] PIPELINE_DIR
Options
- -t, --type <type_>¶
Required Pipeline type. This is used to create the correct pipeline config directory.
- Options:
PipelineTypeEnum.BIDSIFICATION | PipelineTypeEnum.PROCESSING | PipelineTypeEnum.EXTRACTION
- --source-descriptor <source_descriptor>¶
Path to an existing Boutiques descriptor file. This is used to create the pipeline config directory.
- --dry-run¶
Print commands but do not execute them.
- -v, --verbose¶
Verbose mode (Show DEBUG messages).
Arguments
- PIPELINE_DIR¶
Required argument