nipoppy.tabular.processing_status.ProcessingStatusTable¶

class nipoppy.tabular.processing_status.ProcessingStatusTable(*args, **kwargs)¶

A file to track data availability/processing status.

get_completed_participants_sessions(pipeline_name, pipeline_version, pipeline_step, participant_id=None, session_id=None)¶

Get participant-session pairs that have successfully completed a pipeline run.

Can optionally filter within a specific participant and/or session.

Parameters:

pipeline_name (str)
pipeline_version (str)
pipeline_step (str)
participant_id (Optional[str])
session_id (Optional[str])

col_bids_participant_id = 'bids_participant_id'¶

col_bids_session_id = 'bids_session_id'¶

col_participant_id = 'participant_id'¶

col_pipeline_name = 'pipeline_name'¶

col_pipeline_step = 'pipeline_step'¶

col_pipeline_version = 'pipeline_version'¶

col_session_id = 'session_id'¶

col_status = 'status'¶

index_cols¶

model¶: Model class associated with the tabular data.

status_fail = 'FAIL'¶

status_incomplete = 'INCOMPLETE'¶

status_success = 'SUCCESS'¶

status_unavailable = 'UNAVAILABLE'¶