nipoppy.workflows

Classes for running workflows on datasets.

Submodules

• nipoppy.workflows.base
• nipoppy.workflows.bids_conversion
• nipoppy.workflows.dataset_init
• nipoppy.workflows.dataset_status
• nipoppy.workflows.dicom_reorg
• nipoppy.workflows.extractor
• nipoppy.workflows.pipeline
• nipoppy.workflows.pipeline_store
• nipoppy.workflows.runner
• nipoppy.workflows.track_curation
• nipoppy.workflows.tracker

Classes

BaseDatasetWorkflow	Base workflow class with awareness of dataset layout and components.
BasePipelineWorkflow	A workflow for a pipeline that has a Boutiques descriptor.
BaseWorkflow	Base workflow class with logging/subprocess/filesystem utilities.
BidsConversionRunner	Convert data to BIDS.
DicomReorgWorkflow	Workflow for organizing raw DICOM files.
ExtractionRunner	Extract imaging-derived phenotypes (IDPs) from processed data.
InitWorkflow	Workflow for init command.
PipelineInstallWorkflow	Workflow for pipeline install command.
PipelineListWorkflow	List pipelines and versions that have been installed into a dataset.
PipelineRunner	Pipeline runner.
PipelineTracker	Pipeline tracker.
PipelineValidateWorkflow	Workflow for pipeline validate command.
StatusWorkflow	Workflow for status command.
TrackCurationWorkflow	Workflow for creating/updating a dataset's curation status file.